Identified secondary metabolite clusters

Cluster Type From To Most similar known cluster MIBiG BGC-ID
The following clusters are from record CP001510.1:
Cluster 1Terpene-T1pks18811301925899--
Cluster 2Terpene33505393371597Carotenoid_biosynthetic_gene_cluster (100% of genes show similarity)BGC0000647_c1
Cluster 3Siderophore42131654227908--
Cluster 4Other44278974471979--
Cluster 5Terpene47325804753476--
Cluster 6Hserlactone50840365104671--
Cluster 7Nrps52014915247534--

CP001510 - Cluster 1 - Terpene-t1pks

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(pk)
MexAM1_META1p1821
PKS signature: mal
Minowa: mmal
consensus: pk

Gene cluster description

Download cluster GenBank file
CP001510 - Gene Cluster 1. Type = terpene-t1pks. Location: 1881130 - 1925899 nt. Click on genes for more information.
Show pHMM detection rules used
terpene: (Terpene_Synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth)
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters

CP001510 - Cluster 2 - Terpene

Gene cluster description

Download cluster GenBank file
CP001510 - Gene Cluster 2. Type = terpene. Location: 3350539 - 3371597 nt. Click on genes for more information.
Show pHMM detection rules used
terpene: (Terpene_Synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

Homologous known gene clusters

CP001510 - Cluster 3 - Siderophore

Gene cluster description

Download cluster GenBank file
CP001510 - Gene Cluster 3. Type = siderophore. Location: 4213165 - 4227908 nt. Click on genes for more information.
Show pHMM detection rules used
siderophore: (IucA_IucC)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

CP001510 - Cluster 4 - Other

Gene cluster description

Download cluster GenBank file
CP001510 - Gene Cluster 4. Type = other. Location: 4427897 - 4471979 nt. Click on genes for more information.
Show pHMM detection rules used
other: ((PP-binding & AMP-binding) or (PP-binding & A-OX) or (NAD_binding_4 & A-OX) or (NAD_binding_4 & AMP-binding) or LmbU or Neocarzinostat or cycdipepsynth or fom1 or bcpB or frbD or mitE or vlmB or prnB or CaiA or bacilysin or orf2_PTase)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

CP001510 - Cluster 5 - Terpene

Gene cluster description

Download cluster GenBank file
CP001510 - Gene Cluster 5. Type = terpene. Location: 4732580 - 4753476 nt. Click on genes for more information.
Show pHMM detection rules used
terpene: (Terpene_Synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

CP001510 - Cluster 6 - Hserlactone

Gene cluster description

Download cluster GenBank file
CP001510 - Gene Cluster 6. Type = hserlactone. Location: 5084036 - 5104671 nt. Click on genes for more information.
Show pHMM detection rules used
hserlactone: (Autoind_synth)

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Homologous gene clusters

CP001510 - Cluster 7 - Nrps

Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Prediction details

Monomers prediction:
(gly)
MexAM1_META1p5076
NRPSPredictor2 SVM: gly
Stachelhaus code: gly
Minowa: gly
consensus: gly

Search NORINE for peptide in strict mode // relaxed mode

Database cross-links

Link to NORINE database query form
Direct lookup in NORINE database in strict mode // relaxed mode

Gene cluster description

Download cluster GenBank file
CP001510 - Gene Cluster 7. Type = nrps. Location: 5201491 - 5247534 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

Detailed annotation

Homologous gene clusters